During this 3-day course, attendees will learn basic techniques for modeling of biochemical networks including data access and storage due to the FAIR principles. The first day introduces kinetic modeling techniques which will be illustrated and exercised with COPASI. The second day continues with principles of stoichiometric and constraint-based modeling coupled with hands on exercises using CellNetAnalyzer and a demonstration of CNApy. The third day SABIO-RK is used as a resource for kinetic data and FAIRDOM Hub/SEEK is introduced as a data and model management platform fitted to the needs of systems biologists. The hands on exercises throughout the three days will ensure that attendees become familiar with the software tools and with analyzing, creating, editing, importing, simulating and storing biochemical networks.
Prerequisites: Some knowledge of mathematical modeling will be advantageous. The participants should bring their own laptop with MATLAB installed (if you do not have MATLAB please let us know during registration).
Educators: Steffen Klamt, Axel von Kamp, Pavlos Bekiaris, Ursula Kummer, Frank T. Bergmann (de.NBI-SysBio), Maja Rey, Andreas Weidemann, Ulrike Wittig (HITS)
Tue, 9th Aug 9:30 am (CEST / UTC+2) – 11th Aug 2022, 5:00pm
SR42, BioQUANT, Im Neuenheimer Feld 267, 69120 Heidelberg
See also: How to get there