denbi-modsim.github.io

Introduction to kinetic modeling and simulation using COPASI

Abstract:

This two-day virtual workshop, provides an in-depth exploration of kinetic modelling and simulation using COPASI.

On day 1, participants will be introduced to the fundamentals of kinetic modelling and learn about simulation and steady state calculations in COPASI.

Day 2 focuses on parameter estimation and scripting, equipping attendees with the necessary skills to optimize model parameters and automate tasks using python scripting.

Educators:

Frank T. Bergmann, Ursula Kummer

Date:

19-NOV-2024 9am-12p, 20-NOV-2024 9a-12p (CET / UTC +1)

Location:

Online Conferencing (Link will be provided to Registered and confirmed participants)

Requirements:

Participants should have the latest version of COPASI installed.

Materials:

Here the presentations:

• Day 1: Overview Copasi / simulation / steadystate / MCA / parameter scan slides
• Day 2: parameter estimation / scripting overview slides, data set.

More information on scripting can be found on the basico website. Here a link to the COLAB Notebook that we used for the summary.

Registration:

Registration Form

This workshop is part of the de.NBI SysBio Workshop series 2024. more information